BarcodeBERT: Transformers for Biodiversity Analyses

Pablo Millan Arias, Niousha Sadjadi, Monireh Safari, ZeMing Gong, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Zarubiieva, Dirk Steinke, Lila Kari, Angel X. Chang, Scott C. Lowe, Graham W. Taylor

Bioinformatics Advances, early version appeared at the Workshop on Self-Supervised Learning: Theory and Practice (NeurIPS 2023)

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BarcodeMamba+: Advancing State-Space Models for Fungal Biodiversity Research

Tiancheng Gao, Scott C. Lowe, Brendan Furneaux, Angel X. Chang, Graham W. Taylor

The 3rd Workshop on Imageomics: Discovering Biological Knowledge from Images Using AI (NeurIPS 2025)

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Hyperbolic Multimodal Representation Learning for Biological Taxonomies

ZeMing Gong, Chuanqi Tang, Xiaoliang Huo, Nicholas Pellegrino, Austin T. Wang, Graham W. Taylor, Angel X. Chang, Scott C. Lowe, Joakim Bruslund Haurum

ICCV 2025 Workshop BEW

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CLIBD: Bridging Vision and Genomics for Biodiversity Monitoring at Scale

ZeMing Gong, Austin T. Wang, Joakim Bruslund Haurum, Scott C. Lowe, Graham W. Taylor, Angel X. Chang

ICLR 2025

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Enhancing DNA Foundation Models to Address Masking Inefficiencies

Monireh Safari, Pablo Millan Arias, Scott C. Lowe, Lila Kari, Angel X. Chang, Graham W. Taylor

Nucleic Acids Workshop and Machine Learning for Genomics Exploration Workshop at ICLR 2025

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BarcodeMamba: State Space Models for Biodiversity Analysis

Tiancheng Gao, Graham W. Taylor

NeurIPS 2024 Workshop on Foundation Models for Science: Progress, Opportunities, and Challenges

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BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity

Zahra Gharaee, Scott C. Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T. Wang, Joakim Bruslund Haurum, Iuliia Zarubiieva, Lila Kari, Dirk Steinke, Graham W. Taylor, Paul Fieguth, Angel X. Chang

NeurIPS Datasets and Benchmarks 2024

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A Step Towards Worldwide Biodiversity Assessment: The BIOSCAN-1M Insect Dataset

Zahra Gharaee, ZeMing Gong, Nicholas Pellegrino, Iuliia Zarubiieva, Joakim Bruslund Haurum, Scott C. Lowe, Jaclyn T.A. McKeown, Chris C.Y. Ho, Joschka McLeod, Yi-Yun C Wei, Jireh Agda, Sujeevan Ratnasingham, Dirk Steinke, Angel X. Chang, Graham W. Taylor, Paul Fieguth

NeurIPS Datasets and Benchmarks 2023

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